Despite the rigorous application of philosophical ploys to guard against circular reasoning in cladistic analysis it's a poster boy for circular reasoning because it's based in a paradigm which is the result of personal bias.
August 9th
We (that's me and the Holy Spirit) didn’t realize it at the time, but the first nail we hammered into the lid of the coffin of our academic career was a paper about using cladistic phylogenetic analysis to study the Devonian fossil Archaeopteris.
Archaeopteris
We're critical of the philosophical construction of the scientific method because it's been meticulously crafted to exclude any possibility that the truth can be either an acceptable premise, or a possible conclusion.
May 20th
In spherogenetic systematics Fish is a higher rank than Whale. The fish of the sea is everything created in the hydrosphere. Whale is a subcategory. The thing that swallowed Jonah was both a fish and a whale.
Primitive or Advanced?
Cladistic phylogenetic analysis works by grouping species based on shared derived characteristics (synapomorphies). All of the members of a homologous group have a common ancestor.
Archaeopteris (Dawson): A case study in the applicability of phylogenetic analysis to fossil taxa
Cladistic phylogenetic analysis is circular reasoning based on personal bias.